A.10 Learning more

There are many other resources and workshops available to learn to use plyranges and related Bioconductor packages, especially for more realistic analyses than the ones covered here:

• The fluentGenomics workflow package is an end-to-end workflow package for integrating differential expression results with differential accessibility results.
• The Bioc 2018 Workshop book has worked examples of using plyranges to analyse publicly available genomics data.
• The extended vignette in the plyrangesWorkshops package has a detailed walk through of using plyranges for coverage analysis.
• The case study by Michael Love using plyranges with tximeta to follow up on interesting hits from a combined RNA-seq and ATAC-seq analysis.